About FishBox


FishBox is an open-source code repository maintained by the Mathematical Biology Program at the Northwest Fisheries Science Center, Seattle WA. The public may use and download public projects, but registration, access to node-only projects, and creation of new projects is restricted to NOAA scientists. Any NOAA scientist may register directly. Privacy controls on projects can be used to limit access to project members only, node members only (meaning registered FishBox users), or the public. However as FishBox is NOAA controlled, all posted documents and code are subject to FOIA.

FishBox is a simple version control system for working on and collaborating on code. FishBox is intended to be used for the kinds of modeling and statistical code that would later become part of the public domain via publication in academic journals or tech memos. FishBox should not be used for collaboration on projects that are sensitive in nature. All projects are viewable by the FishBox administrators (in the MathBio program) who monitor the site activity to ensure that the site is being used in a manner consistent with the purpose of the site and NOAA rules regarding professional internet usage.

What is Greenboxes?

Greenboxes (Beta) is a Web-based system for organizing and freely distributing conservation software tools. Greenboxes works in a manner similar to node-based electronic manuscript repositories (e.g. ePrint). It is built off of the node-based file sharing software Sculpin, currently in development. A Greenbox node must be locally installed on a server, but has linking capabilities between all other nodes. Each node serves its local institution by providing a user-friendly code management system, and a centralized portal for sharing and collaborating on projects. Through the establishment of multiple nodes, the cross-linking capabilities of Greenboxes will facilitate a community-wide conservation code network that can be searched from any local node.

Why have we developed Greenboxes? The quality, quantity and availability of data suitable for informing conservation actions are growing much more rapidly than the availability of tools capable of capitalizing on such data. The cutting-edge of quantitative conservation biology is too often out of reach of conservation practitioners because software tools are typically not provided along with descriptions of new techniques. The conservation community would be well served by a program that allows quantitative conservation biologists to both collaborate and disseminate their tools and expertise to the greater community of conservation biologists. Moreover, as the network of Greenbox warehouses grows, we anticipate that connections and collaborations within and among participating institutions will spur a more rapid evolution of quantitative conservation tools.

As we continue to refine Greenboxes, we are paying close attention to ease of use in order to make Greenboxes more like Flickr (i.e. simple/minimalist interface) and less like many of the pre-existing code management solutions that are geared toward programmers.

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